Hint: Right click on files, folders and tool icons to get
a menu of actions you can perform with them.
Hint: Dragging files onto a tool's icon will launch it on those files.
Hint: Most tools can be launched with more than one file
Simply drag another file into the launch dialog before
launching to add a second (etc) file to be sent
Hint: Directories and files in the 'Public' and 'Shared To Username' folders belong to
other users who have shared them with you.
Hint: Click on 'Sharing' on a file or folder menu to share a file
with another user, group or the public.
Hint: You can drag a file or folder and drop it into a
folder to move it to a new directory. If you hold down shift when you
drop it, it will be copied instead of moved.
Hint: You can sort the files and directories in GenomeSpace
by clicking on the table headers
Hint: You can change your email and password from
the 'Profile' item on the user menu
(top right of the page)
Hint: You must have java enabled and give permission
to the applet to be able to upload files
Hint: You can reorder tools or remove them from your
toolbar from the 'View/Customize toolbar...' menu.
Hint: You can drop files from your desktop onto a folder
to upload them to GenomeSpace (only works in HTML5 Browsers).
Hint: You can add your own S3 buckets if you have data
stored in Amazon's S3 system
GenomeSpace
 
System Status
File
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Recipes
Help
3

 

Selected Files

Drop files here

Filename:
Owner:
Email:
New Password:
Confirm New Password:

Include me in user searches:
Receive GenomeSpace emails:
Storage used: of

Share with UserShare with GroupShare with Public
User name:
Read
Read, Write & Delete 		showing groups
Group name:
Read
Read, Write & Delete
Allow public access
Read
Read, Write & Delete

Notify via email


(
)

Convert to:

Directory name:
Group Names:

Group Members

Create New Group
Group name:
Description:

 add user:
User can administer group
Enter or drag-n-drop the URL and the GenomeSpace servers will download it directly into the directory of your choice.

The Uploader could not be started.

If you are using a browser that supports HTML5 (e.g., Firefox 18 or higher, Chrome 24 or higher), you can upload files to GenomeSpace by dragging them from your desktop and dropping them onto the folder icon () in GenomeSpace.

To continue with the java Applet uploader: Check to see if your browser is asking permission for the Uploader to run (usually at the top of the page) and grant permission to use the uploader.

If this is not shown, please restart your browser and try again. If the problem persists try a different browser (e.g. Firefox or Chrome) and check the user forum or contact the GenomeSpace Help Desk.

Java needs to be enabled to use the GenomeSpace uploader

Please follow the instructions here to enable java for your browser.

Filename Size Destination Date Status
  • Preview
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  • IGV
Click on column checkbox to select the column(s) you want to save.
Save as:    Start at row:    End at row:    delimiter:    treat consecutive delimiters as one
Toggle all columns
Upload files by dragging from the desktop and dropping onto a GenomeSpace folder.
Drop into directory
Drag and drop to reorder GenomeSpace tools.

GenomeSpace Tools

Shown Hidden

      Private Tools & Data sources


      Name:
      Enter the name, a brief description and the provider (typically an organization name such as 'Broad Institute'). The Base URL should be the page in the app you wish to have launched or the URL of a jnlp launch file for desktop applications. The Help URL is optional but recommended if you will be sharing this app with others. For details on preparing the tool see Adding a tool to GenomeSpace on the main GenomeSpace web site.
      Description:
      Tool Provider:
      Base URL:
      Help URL:

      File Parameter:
      Parameter name:Required:
      Allow multiple files:Multiple file Delimiter:
      example call with dummy files
      Request a new format be added to the available formats list.
      File parameters (optional) are used to pass GenomeSpace file URLs to the tool when they are launched. If a File Parameter is named, this tool will show up in the list of tools. If not it will show in the list of Data Sources. The parameter name will be added to the Base URL (as in the example call). If multiple files can be passed the the tool at once, the Delimiter will separate the file URLs. File Formats (optional) indicate what formats the tool accepts but will not prevent other files being sent to the tool. Select as many as apply.
      Icon
      Provide a custom Icon for your tool to use in the tool bar. You can use gif, jpg, and png files. The icon will be scaled to 44x44 pixels on the toolbar and smaller in a few other dialogs.
      Share with groups:

      You may only share private tools with groups you are a member of. Users in the group will be able to see and launch the tool, but not edit or delete it. Click on the icon to create or edit user groups




      Upload files by dragging them from the desktop and dropping them on your account folder labeled   in the browser.

      Launch a tool on uploaded data by dragging the files from your account folder and dropping them on a tool icon. Or just click on a tool icon to launch the tool.

      Tools either launch in a new browser window or launch on your desktop. Some desktop tools require adjusting browser and Java security settings. Find out how in FAQ2.2.


      Learn more in Highlights & Quickstart.
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      © The Broad Institute of MIT and Harvard